Kohlbacher, Oliver: search on Z-Library

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1

Visualization of omics data for systems biology

Gehlenborg, Nils, O'Donoghue, Seán I, Baliga, Nitin S, Goesmann, Alexander, Hibbs, Matthew A, Kitano, Hiroaki, Kohlbacher, Oliver, Neuweger, Heiko, Schneider, Reinhard, Tenenbaum, Dan

Journal:

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

2

[IEEE 2017 Global Internet of Things Summit (GIoTS) - Geneva, Switzerland (2017.6.6-2017.6.9)] 2017 Global Internet of Things Summit (GIoTS) - Scaling home automation to public buildings: A distributed multiuser setup for OpenHAB 2

Heimgaertner, Florian, Hettich, Stefan, Kohlbacher, Oliver, Menth, Michael

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

3

Differential Enzymatic 16O/18O Labelling for the Detection of Cross-Linked Nucleic Acid-Protein Heteroconjugates

Flett, Fiona J, Sachsenberg, Timo, Kohlbacher, Oliver, Mackay, C. Logan, Interthal, Heidrun

Journal:

Analytical Chemistry

Year:

2017

Language:

english

File:

PDF, 577 KB

english, 2017

4

Favorable immune signature in CLL patients, defined by antigen-specific T-cell responses, might prevent second skin cancers

Walz, Juliane Sarah, Kowalewski, Daniel Johannes, Backert, Linus, Nelde, Annika, Kohlbacher, Oliver, Weide, Benjamin, Kanz, Lothar, Salih, Helmut Rainer, Rammensee, Hans-Georg, Stevanović, Stefan

Journal:

Leukemia and Lymphoma

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

5

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

Kahles, André, Lehmann, Kjong-Van, Toussaint, Nora C., Hüser, Matthias, Stark, Stefan G., Sachsenberg, Timo, Stegle, Oliver, Kohlbacher, Oliver, Sander, Chris, Rätsch, Gunnar, Caesar-Johnson, Samantha

Journal:

Year:

2018

Language:

english

File:

PDF, 42.00 MB

english, 2018

6

Induction of neoantigen-reactive T cells from healthy donors

Ali, Muhammad, Foldvari, Zsofia, Giannakopoulou, Eirini, Böschen, Maxi-Lu, Strønen, Erlend, Yang, Weiwen, Toebes, Mireille, Schubert, Benjamin, Kohlbacher, Oliver, Schumacher, Ton N., Olweus, Johanna

Journal:

Nature Protocols

Year:

2019

Language:

english

File:

PDF, 1.13 MB

english, 2019

7

Challenges of big data integration in the life sciences

Fillinger, Sven, de la Garza, Luis, Peltzer, Alexander, Kohlbacher, Oliver, Nahnsen, Sven

Journal:

Analytical and Bioanalytical Chemistry

Year:

2019

Language:

english

File:

PDF, 915 KB

english, 2019

8

Charting a dynamic DNA methylation landscape of the human genome

Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Philip L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas

Journal:

Year:

2013

Language:

english

File:

PDF, 524 KB

english, 2013

9

Challenges in Large-Scale Computational Mass Spectrometry and Multiomics

Kohlbacher, Oliver, Vitek, Olga, Weintraub, Susan T.

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 138 KB

english, 2016

10

BALLDock/SLICK: A New Method for Protein-Carbohydrate Docking

Kerzmann, Andreas, Fuhrmann, Jan, Kohlbacher, Oliver, Neumann, Dirk

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 845 KB

english, 2008

11

Food Authentication: Small Molecule Profiling as a Tool for the Geographic Discrimination of German White Asparagus

Creydt, Marina, Hudzik, Daria, Rurik, Marc, Kohlbacher, Oliver, Fischer, Markus

Journal:

Journal of Agricultural and Food Chemistry

Year:

2018

Language:

english

File:

PDF, 1.65 MB

english, 2018

12

BNDB – The Biochemical Network Database

Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 776 KB

english, 2007

13

GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments

Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 656 KB

english, 2008

14

An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics

Weisser, Hendrik, Nahnsen, Sven, Grossmann, Jonas, Nilse, Lars, Quandt, Andreas, Brauer, Hendrik, Sturm, Marc, Kenar, Erhan, Kohlbacher, Oliver, Aebersold, Ruedi, Malmström, Lars

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.63 MB

english, 2013

15

The bifunctional role of aconitase in Streptomyces viridochromogenes Tü494

Michta, Ewelina, Schad, Klaus, Blin, Kai, Ort-Winklbauer, Regina, Röttig, Marc, Kohlbacher, Oliver, Wohlleben, Wolfgang, Schinko, Eva, Mast, Yvonne

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 582 KB

english, 2012

16

The MoSGrid Science Gateway – A Complete Solution for Molecular Simulations

Krüger, Jens, Grunzke, Richard, Gesing, Sandra, Breuers, Sebastian, Brinkmann, André, de la Garza, Luis, Kohlbacher, Oliver, Kruse, Martin, Nagel, Wolfgang E., Packschies, Lars, Müller-Pfefferkorn, Ra

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 4.02 MB

english, 2014

17

A Fully Computational Model for Predicting Percutaneous Drug Absorption

Neumann, Dirk, Kohlbacher, Oliver, Merkwirth, Christian, Lengauer, Thomas

Journal:

Journal of Chemical Information and Modeling

Year:

2006

Language:

english

File:

PDF, 163 KB

english, 2006

18

FRED 2 – An Immunoinformatics Framework for Python

Schubert, Benjamin, Walzer, Mathias, Brachvogel, Hans-Philipp, Szolek, András, Mohr, Christopher, Kohlbacher, Oliver

Journal:

Year:

2016

Language:

english

File:

PDF, 201 KB

english, 2016

19

Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors

Venturelli, Sascha, Belz, Regina G., Kämper, Andreas, Berger, Alexander, von Horn, Kyra, Wegner, André, Böcker, Alexander, Zabulon, Gérald, Langenecker, Tobias, Kohlbacher, Oliver, Barneche, Fredy, We

Journal:

Year:

2015

Language:

english

File:

PDF, 1.75 MB

english, 2015

20

Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells

Scheidt, Tamara, Alka, Oliver, Gonczarowska-Jorge, Humberto, Gruber, Wolfgang, Rathje, Florian, DellâAica, Margherita, Rurik, Marc, Kohlbacher, Oliver, Zahedi, RenÃ© P., Aberger, Fritz, Huber, Chris

Journal:

Cell Communication and Signaling

Year:

2020

File:

PDF, 3.25 MB

2020

21

Displacement chromatography as first separating step in online two-dimensional liquid chromatography coupled to mass spectrometry analysis of a complex protein sample—The proteome of neutrophils

Maria Trusch, Kati Tillack, Marcel Kwiatkowski, Andreas Bertsch, Robert Ahrends, Oliver Kohlbacher, Roland Martin, Mireia Sospedra, Hartmut Schlüter

Journal:

Journal of Chromatography A

Year:

2012

Language:

english

File:

PDF, 618 KB

english, 2012

22

MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

Torsten Blum, Sebastian Briesemeister, Oliver Kohlbacher

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 995 KB

english, 2009

23

Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families

Röttig, Marc, Rausch, Christian, Kohlbacher, Oliver, Ponting, Chris P.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 431 KB

english, 2010

24

Copper oxide nanoparticle toxicity profiling using untargeted metabolomics

Boyles, Matthew S. P., Ranninger, Christina, Reischl, Roland, Rurik, Marc, Tessadri, Richard, Kohlbacher, Oliver, Duschl, Albert, Huber, Christian G.

Journal:

Particle and Fibre Toxicology

Year:

2015

Language:

english

File:

PDF, 2.47 MB

english, 2015

25

An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

Domingo-Calap, Pilar, Schubert, Benjamin, Joly, Mélanie, Solis, Morgane, Untrau, Meiggie, Carapito, Raphael, Georgel, Philippe, Caillard, Sophie, Fafi-Kremer, Samira, Paul, Nicodème, Kohlbacher, Olive

Journal:

Year:

2018

Language:

english

File:

PDF, 1.88 MB

english, 2018

26

The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors

Tobias Kirchler, Sebastian Briesemeister, Miriam Singer, Katia Schütze, Melanie Keinath, Oliver Kohlbacher, Jesus Vicente-Carbajosa, Markus Teige, Klaus Harter, Christina Chaban

Journal:

European Journal of Cell Biology

Year:

2010

Language:

english

File:

PDF, 581 KB

english, 2010

27

Abstract analysis of pathways using the BN++ software framework

Jan Küntzer, Benny Kneissl, Oliver Kohlbacher, Hans-Peter Lenhof

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 195 KB

english, 2007

28

miHA-Match: Computational detection of tissue-specific minor histocompatibility antigens

Magdalena Feldhahn, Pierre Dönnes, Benjamin Schubert, Karin Schilbach, Hans-Georg Rammensee, Oliver Kohlbacher

Journal:

Journal of Immunological Methods

Year:

2012

Language:

english

File:

PDF, 297 KB

english, 2012

29

BALL-SNPgp – from genetic variants towards computational diagnostics

Mueller, Sabine C., Backes, Christina, Gress, Alexander, Baumgarten, Nina, Kalinina, Olga V., Moll, Andreas, Kohlbacher, Oliver, Meese, Eckart, Keller, Andreas

Journal:

Year:

2016

Language:

english

File:

PDF, 213 KB

english, 2016

30

From the desktop to the grid: scalable bioinformatics via workflow conversion

de la Garza, Luis, Veit, Johannes, Szolek, Andras, Röttig, Marc, Aiche, Stephan, Gesing, Sandra, Reinert, Knut, Kohlbacher, Oliver

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 2.31 MB

english, 2016

31

On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications

Novák, Jiří, Hoksza, David, Skopal, Tomáš, Kohlbacher, Oliver

Journal:

Journal of Integrative Bioinformatics

Year:

2013

Language:

english

File:

PDF, 299 KB

english, 2013

32

Differenzielle Proteomanalyse – Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges)

Kohlbacher, Oliver, Reinert, Knut

Journal:

it - Information Technology

Year:

2004

Language:

german

File:

PDF, 708 KB

german, 2004

33

Untargeted Metabolomics Reveals Molecular Effects of Ketogenic Diet on Healthy and Tumor Xenograft Mouse Models

Licha, David, Vidali, Silvia, Aminzadeh-Gohari, Sepideh, Alka, Oliver, Breitkreuz, Leander, Kohlbacher, Oliver, Reischl, Roland J., Feichtinger, René G., Kofler, Barbara, Huber, Christian G.

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 2.85 MB

english, 2019

34

Structure prediction of protein complexes by an NMR-based protein docking algorithm

Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof

Journal:

Journal of Biomolecular NMR

Year:

2001

Language:

english

File:

PDF, 103 KB

english, 2001

35

Identification of Ppar Î³ -modulated miRNA hubs that target the fibrotic tumor microenvironment

Winkler, Ivana, Bitter, Catrin, Winkler, Sebastian, Weichenhan, Dieter, Thavamani, Abhishek, Hengstler, Jan G., Borkham-Kamphorst, Erawan, Kohlbacher, Oliver, Plass, Christoph, Geffers, Robert, Weiski

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.78 MB

2020

36

Automated scaffold selection for enzyme design

Christoph Malisi, Oliver Kohlbacher, Birte Höcker

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 234 KB

english, 2009

37

CADDSuite – a workflow-enabled suite of open-source tools for drug discovery

Oliver Kohlbacher

Journal:

Journal of Cheminformatics

Year:

2012

Language:

english

File:

PDF, 65 KB

english, 2012

38

MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment

Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang

Journal:

Journal of Cheminformatics

Year:

2012

Language:

english

File:

PDF, 70 KB

english, 2012

39

Blocked Inverted Indices for Exact Clustering of Large Chemical Spaces

Thiel, Philipp, Sach-Peltason, Lisa, Ottmann, Christian, Kohlbacher, Oliver

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 285 KB

english, 2014

40

[Lecture Notes in Computer Science] Computational Life Sciences Volume 3695 || Robust Perron Cluster Analysis for Various Applications in Computational Life Science

R. Berthold, Michael, Glen, Robert C., Diederichs, Kay, Kohlbacher, Oliver, Fischer, Ingrid

Year:

2005

Language:

english

File:

PDF, 300 KB

english, 2005

41

[ACM Press the 2nd ACM Conference - Chicago, Illinois (2011.08.01-2011.08.03)] Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '11 - T-cell epitope prediction based on self-tolerance

Toussaint, Nora C., Feldhahn, Magdalena, Ziehm, Matthias, Stevanović, Stefan, Kohlbacher, Oliver

Year:

2011

Language:

english

File:

PDF, 240 KB

english, 2011

42

Immunoinformatics and epitope prediction in the age of genomic medicine

Backert, Linus, Kohlbacher, Oliver

Journal:

Genome Medicine

Year:

2015

Language:

english

File:

PDF, 825 KB

english, 2015

43

From hype to reality: data science enabling personalized medicine

Fröhlich, Holger, Balling, Rudi, Beerenwinkel, Niko, Kohlbacher, Oliver, Kumar, Santosh, Lengauer, Thomas, Maathuis, Marloes H., Moreau, Yves, Murphy, Susan A., Przytycka, Teresa M., Rebhan, Michael,

Journal:

Year:

2018

Language:

english

File:

PDF, 2.39 MB

english, 2018

44

Application of displacement chromatography for the proteome analysis of a human plasma protein fraction

Robert Ahrends, Björn Lichtner, Andreas Bertsch, Oliver Kohlbacher, Diana Hildebrand, Maria Trusch, Hartmut Schlüter

Journal:

Journal of Chromatography A

Year:

2010

Language:

english

File:

PDF, 591 KB

english, 2010

45

POPISK: T-cell reactivity prediction using support vector machines and string kernels

Chun-Wei Tung, Matthias Ziehm, Andreas Kämper, Oliver Kohlbacher, Shinn-Ying Ho

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 516 KB

english, 2011

46

Application of displacement chromatography for the analysis of a lipid raft proteome

Maria Trusch, Alexandra Böhlick, Diana Hildebrand, Björn Lichtner, Andreas Bertsch, Oliver Kohlbacher, Sebastian Bachmann, Hartmut Schlüter

Journal:

Journal of Chromatography B

Year:

2010

Language:

english

File:

PDF, 584 KB

english, 2010

47

OpenMS – An open-source software framework for mass spectrometry

Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 731 KB

english, 2008

48

Comparison of displacement versus gradient mode for separation of a complex protein mixture by anion-exchange chromatography

Robert Ahrends, Björn Lichtner, Friedrich Buck, Diana Hildebrand, Marta Kotasinska, Oliver Kohlbacher, Marcel Kwiatkowski, Moritz Wagner, Maria Trusch, Hartmut Schlüter

Journal:

Journal of Chromatography B

Year:

2012

Language:

english

File:

PDF, 651 KB

english, 2012

49

Improving global feature detectabilities through scan range splitting for untargeted metabolomics by high-performance liquid chromatography-Orbitrap mass spectrometry

Ranninger, Christina, Schmidt, Lukas E., Rurik, Marc, Limonciel, Alice, Jennings, Paul, Kohlbacher, Oliver, Huber, Christian G.

Journal:

Analytica Chimica Acta

Year:

2016

Language:

english

File:

PDF, 1.52 MB

english, 2016

50

LFQProfiler and RNP xl – Open-source tools for label-free quantification and protein-RNA cross-linking integrated into Proteome Discoverer

Veit, Johannes, Sachsenberg, Timo, Chernev, Aleksandar, Aicheler, Fabian, Urlaub, Henning, Kohlbacher, Oliver

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.20 MB

english, 2016

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